rs239788548 SNP Detail

Summary

• ID
  rs239788548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:11506443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCGTTCC TCATTCCAAA GAGCCCGGGG
  AGCTCAGCCG GTGGGAAGCA GTCGTGTGAC CTGGGATGTC GGGACAGAAC ATTCCAGGCG
  CACAGCTGTT GGCAGTCTGG AATCTTAGGT TGTTCTAGGG CTCCAAGAAG GTCTTGTGAA
  R
  CAGGACTGCA GGACAGGGAG GTTCAGGGGG TGCGCCTTGG TGACCAAGCA GAAGTGAGTC
  ATGCTCCACC CAATAGCCCC ATGCCCTATG TCCAAGGAGT CAAACAGGAG CCTGAAGAAC
  TTCCTGAGAA GGAAACTATT CTGAAAGAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323895416	CHEV_12_11463248	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239788548					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:11506443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4420	CpG island 4420	23 bp distal
Gm59688	predicted gene, 59688	within coordinates
Rad51ap2	RAD51 associated protein 2	within coordinates
Rr265150	regulatory region 265150	within coordinates
Tssr112803	transcription start site region 112803	384 bp downstream