rs239795769 SNP Detail

Summary

• ID
  rs239795769
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52649996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAGCTT CTTCAGCTTC
  ATCAATGTCA AATATCTTTT TCGTCTTTTT CTTCTTTTTC TTTTGATTAA AGAAGTTCAA
  ATCATCTAAG TCATCAGAAG CATCTTTCTT CCTACTGTCT TCCTCATCAG CGTCCACGTC
  TTTTTCTTCA GTTGGTTCTG GCTCCACTTC TTTTGTCTCT GAGGGCTGGG TTTCTTCTGT
  M
  TGGGCATCAC CTTCTTCATC TAACATAAAG GGCTTCTTCT TCTTCTTTTT CTTTTTGCTC
  ATAGTAGGAT CAAAAATCAT CTCGTCCCCG GACATGGCTG TAGTCGAGCG GGTTCGGCAG
  GGATGAAAAG TCAAACCGGT CGGCTTCACG GCCCGGAGTC AGCGTAGCTC CCACCGATAC
  TTCTCACAGC ACCGCACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss374682822	MGP_WTSI_8_53282315	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs239795769					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374682822	MGP_WTSI_8_53282315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52649996 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	within coordinates
Gm64848	predicted gene, 64848	39 bp downstream
Rr663484	regulatory region 663484	96 bp proximal
Tssr81291	transcription start site region 81291	63 bp upstream
Tssr81292	transcription start site region 81292	78 bp downstream
Tssr81293	transcription start site region 81293	173 bp downstream
Tssr81294	transcription start site region 81294	187 bp downstream