rs239797186 SNP Detail

Summary

• ID
  rs239797186
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8473349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCGGGGC ACATTTGCTG
  ATAGTTGTAT TGTTTCCGCC TCCTCACTAG CTACGGCTCC TCTCCCGGGC GAGGCCTGTC
  ACCGACCAGC AGTCGCTCCG CTCAGCCCGG AGCTCTCCTA ATCCCCGAGC TCAAGTAGAT
  TCCGCTGGCC CGCGGCCTGC ACTCTCCGCC GGGCCTACGC CTCCCCGGCC GCCCGGCAGG
  K
  AGCCCGGTTC CCCGTCACCG AAGCCGGCCG GGAGAGGCTA CGAACCCCGC CGCCACCGCC
  GCCGCCGCCG CCACCCAGGG TGGCTGCCGC CGGAGAGGAG CGAGCGAGCG AACTCACTCT
  CTCGACTCGC CCCGTGGAAG AGACCCGGGG CCGCTGAGGA AACGGCGGGG AGGGGAGCGA
  GGAGGAGAAA CGCTGAGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965637	MGP_WTSI_15_8393865	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239797186					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965637	MGP_WTSI_15_8393865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8473349 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	within coordinates
Gm63261	predicted gene, 63261	1461 bp upstream
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	within coordinates
Rr499033	regulatory region 499033	1331 bp distal
Rr499034	regulatory region 499034	within coordinates
Rr499035	regulatory region 499035	588 bp proximal
Rr499036	regulatory region 499036	1472 bp proximal
Rr499037	regulatory region 499037	1589 bp proximal
Tssr4546	transcription start site region 4546	1000 bp downstream
Tssr130591	transcription start site region 130591	229 bp downstream
Tssr130592	transcription start site region 130592	868 bp upstream
Tssr130593	transcription start site region 130593	1100 bp upstream
Tssr130594	transcription start site region 130594	1545 bp upstream
Tssr130595	transcription start site region 130595	1700 bp upstream
Tssr133664	transcription start site region 133664	299 bp downstream
Tssr133665	transcription start site region 133665	353 bp downstream
Tssr133666	transcription start site region 133666	570 bp downstream
Tssr133667	transcription start site region 133667	584 bp downstream
Tssr133668	transcription start site region 133668	744 bp downstream