rs239801317 SNP Detail

Summary

• ID
  rs239801317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17849957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCAAGA GAGGGTGAAG
  GGCAGGGAGA AAATTATAGT AATAGTTGCA ATGAGTCACT TGCTTCTAGA TCAAGATCAG
  AGACTCTGCT CTCCGTGTTC ACAGCGGACC TTGATTTAAT GTCATACAAT TAAGGCACGC
  GGTGAATGCC AAGAGCGGAG CCTACGGCTG CACTTGAAGG ACATCCGAGA GAAGTTAGGA
  R
  GGGTGGGGAG AAACAATTCT AGAATGAACC CATCCTGTGC GACACAAGGA CCCCTCGCAT
  TGATTCAAAA TCTTTAGAAT ACAAGACAGT CAAATGTTTT TCAGCGAGAA TCTGGGAAAT
  CCGCATGCAT ACTCCCAAGG GGAATATTAG AGGTTTCATT GACAGCTGTC AGGAGAGCTG
  TAGTTCCCAT TGGTGCAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118735	MGP_WTSI_3_17695793	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239801317					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118735	MGP_WTSI_3_17695793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17849957 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	775 bp distal
Gm66000	predicted gene, 66000	1575 bp upstream
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	23 bp downstream
Mir124b	microRNA 124b	52 bp upstream
Rr573851	regulatory region 573851	1863 bp distal
Rr573852	regulatory region 573852	1930 bp proximal
Tssr28485	transcription start site region 28485	1867 bp downstream
Tssr28486	transcription start site region 28486	1801 bp downstream
Tssr28487	transcription start site region 28487	1751 bp downstream
Tssr28488	transcription start site region 28488	1454 bp downstream
Tssr28489	transcription start site region 28489	47 bp downstream