rs239801975 SNP Detail

Summary

• ID
  rs239801975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134335467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTACATCT CAAATGTGGC
  ATTTTCTTTC TTTCTGCCTC ATCAGGTTTA TCTGAAAGGT GTGCACCCCA AATTTCCTGA
  AGGAGGGAAG ATGTCTCAAT ACCTGGATAG CCTGAAGATT GGGGATATGG TGGAGTTCCG
  GGGGCCGAGC GGGTTGCTCA GTTATGCTGG GAAAGGTGAG TATCTGTCCT TTCCTTCCTA
  Y
  AGTCTCACTT CTCCTGTCCC TACAGTCCAA GGCCCCCAGG CCCAGCCCCA GTCCCATCTT
  CAACCTCCTT GTTCCATTTC CCCCCAGAAT CTGCATGTGT GCATGGGTGT ACCTGGGCAA
  AGTCTCCTGA AGCAACCATG CTATATGGAA AGGCAGATTT CACCCTGTGG AGATTACCAG
  AGGAAACCTA TGCCTCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351517975	MGP_WTSI_1_136304306	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239801975					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351517975	MGP_WTSI_1_136304306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134335467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi767	CpG island 767	1324 bp distal
Cyb5r1	cytochrome b5 reductase 1	within coordinates
Rr372070	regulatory region 372070	1623 bp downstream
Tssr217	transcription start site region 217	1759 bp downstream
Tssr218	transcription start site region 218	1667 bp downstream
Tssr8876	transcription start site region 8876	1993 bp downstream
Tssr8877	transcription start site region 8877	1937 bp downstream
Tssr8878	transcription start site region 8878	1916 bp downstream
Tssr8879	transcription start site region 8879	1724 bp downstream
Tssr8880	transcription start site region 8880	1700 bp downstream
Tssr8881	transcription start site region 8881	1403 bp downstream
Tssr8882	transcription start site region 8882	1372 bp downstream
Tssr8883	transcription start site region 8883	1344 bp downstream
Tssr8884	transcription start site region 8884	357 bp upstream