rs239812318 SNP Detail

Summary

• ID
  rs239812318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73073536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCT CTGCACGGCC GCTTCCTCCT
  Y
  GCGCCTCCCG GGCGGCTAGT GAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708337	CHEV_8_74843591	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239812318					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73073536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	within coordinates
Gm63983	predicted gene, 63983	1833 bp upstream
Klf2	Kruppel-like transcription factor 2 (lung)	within coordinates
Rr400967	regulatory region 400967	565 bp downstream
Rr665300	regulatory region 665300	1844 bp distal
Rr665301	regulatory region 665301	1343 bp distal
Rr665302	regulatory region 665302	649 bp distal
Tssr2606	transcription start site region 2606	784 bp upstream
Tssr77968	transcription start site region 77968	800 bp downstream
Tssr77969	transcription start site region 77969	777 bp downstream
Tssr77970	transcription start site region 77970	621 bp downstream
Tssr77971	transcription start site region 77971	121 bp downstream
Tssr77972	transcription start site region 77972	85 bp downstream
Tssr77973	transcription start site region 77973	58 bp downstream
Tssr77974	transcription start site region 77974	within coordinates
Tssr77975	transcription start site region 77975	134 bp upstream
Tssr77976	transcription start site region 77976	373 bp upstream