rs239812449 SNP Detail

Summary

• ID
  rs239812449
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11178952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTAGGC TGTTTCTTTT
  GCTGATTGAG AGTGCATATA TATGACGATT TAGCCTAGGA AGATCTGAAA CCTGCACAGT
  TCCCTGCCAA GTTGAGCAAT TCAATCTAAA TGAAGGGGTT CTGTTTTAGT TTTTACAACT
  GTTGTATCGT CGTTTAATCC CCTTGGTGAC TCTTACTGCC TGTCCCAAGG GTAACCTTTC
  W
  GGCATCAATA GTTTCTAATT CCAAGGCCCA GGATTGCTGT CTACACTTTG AAATGGCAGC
  AGCTTCTCAG GGAGATTCTT GTTGCCCGAT GTTTGGTCAG GTTCACTTGT GCACTGCCTT
  GTGCTGTGGT GGCTCAGGGT GGCAGTGACT CCTGGACAAG CTCCCAACAC CTGTTCTCCC
  ACCAGTGCCC CCTCCCAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353088293	MGP_WTSI_2_11095768	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239812449					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353088293	MGP_WTSI_2_11095768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11178952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	1474 bp distal
Gm74583	predicted gene, 74583	1899 bp upstream
Prkcq	protein kinase C, theta	within coordinates
Tssr402	transcription start site region 402	1996 bp downstream
Tssr403	transcription start site region 403	1756 bp downstream
Tssr16102	transcription start site region 16102	1969 bp downstream
Tssr16103	transcription start site region 16103	1942 bp downstream
Tssr16104	transcription start site region 16104	1904 bp downstream
Tssr16105	transcription start site region 16105	1839 bp downstream
Tssr16106	transcription start site region 16106	1814 bp downstream
Tssr16107	transcription start site region 16107	1791 bp downstream
Tssr16108	transcription start site region 16108	1774 bp downstream
Tssr16109	transcription start site region 16109	1722 bp downstream
Tssr16110	transcription start site region 16110	1722 bp upstream