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rs239812529 SNP Detail
Summary
  • ID
    rs239812529
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:45314775 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTACCATGGA CAGGTGGTAC
    CTGGGTGAGT CTCCCAAGCC TGGGTCTCCC TGCCCTGCTC AACTTGGATT CAGGGGAGCA
    CCCATGGCTT TCATATACAC CTGCTGACTC CTCACAATTG TGGGAGAAAC AGAAATGGGA
    GAGACAGGCT GCCCTAATAG GGACGGGGAC CTCTGAGCCA GAGGCTATGG AAATCAACTC
    Y
    CTATCAGCCT CCTCATCCAG CTGTGTGCCC GTGCATCAGA CTACCGAGTC ACATCTTCAT
    CCCCGGTACT TCCTAGCTGC CTGCTCTCTG GCAGGTTATG CCACTTGTCT GTGCCTCAGA
    TGAGACAGGA TGAAGCTAGT GCTGCTTTTT CCAACTGAGC CATGGCAGTG GAGGGGTGAC
    TTCCCCAGTG CCTAGAACAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377432900 MGP_WTSI_9_45211560 EVA_MGPV3 EVA_MGPV3 f SNP T T T C C C C C C C C C C C C C C C C T C C T C C C C T T C C T C T C C C C C C T C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239812529 SNP T T T C C C C C C C C C C C C C C C C T C C T C C C C T T C C T C T C C C C C C T C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss377432900 MGP_WTSI_9_45211560 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:45314775 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Fxyd2 FXYD domain-containing ion transport regulator 2 within coordinates
Gm68814 predicted gene, 68814 within coordinates
Rr195106 regulatory region 195106 1375 bp distal
Rr195107 regulatory region 195107 1826 bp proximal
Rr200381 regulatory region 200381 1575 bp distal
Rr209195 regulatory region 209195 1226 bp proximal
Tssr84783 transcription start site region 84783 903 bp downstream
Tssr84784 transcription start site region 84784 851 bp downstream
Tssr84785 transcription start site region 84785 319 bp downstream
Tssr84786 transcription start site region 84786 288 bp downstream
Tssr84787 transcription start site region 84787 267 bp downstream
Tssr84788 transcription start site region 84788 236 bp downstream
Tssr84789 transcription start site region 84789 209 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory