rs239816175 SNP Detail

Summary

• ID
  rs239816175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5877178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaCAACAAA AGAAGAAACC AAAGCAAAAA
  AACCACAGAC AACAACTAAA ATCAATAgag gcagatacct ggggatctct gagttctagg
  ctgacctggt ctatagagtg agttccagga cactcagagc tacacacagt gagaccctga
  Y
  ccccccaaaa aaataaaaTA AAGGAGCTGT ACTATACGTC CTGTATATGT TCTGCAGTTC
  AGACTCCATT CCAACTCCCT CAGATCGCTA TGCATTACAG CGCACATGGA CCATGGGGGA
  GGAGAAAGAA CAACGGCTAA GCACCTGGAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717593	CHEV_19_5827150	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239816175					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5877178 () rs orientation: forward

Symbol	Name	Function Class
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	1223 bp proximal
Tssr157766	transcription start site region 157766	1143 bp upstream
Tssr157767	transcription start site region 157767	404 bp upstream
Tssr157768	transcription start site region 157768	362 bp upstream
Tssr157769	transcription start site region 157769	310 bp upstream
Tssr157770	transcription start site region 157770	221 bp upstream
Tssr157771	transcription start site region 157771	179 bp upstream
Tssr157772	transcription start site region 157772	1015 bp downstream
Tssr157773	transcription start site region 157773	1146 bp downstream