rs239819991 SNP Detail

Summary

• ID
  rs239819991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72234485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGCTCTT CTGGGTATCT GTTCCCTGTG
  CAGTCTCAGG TAGACTATGT AATCTCTGAG CCTGTTTACC CTTTGTTACC ATGACAGTAC
  ATAACAAGAA AAAGGTTCAG AAGGAAAGTA TGTAACCACG TAGCCTAGCC CCAGGCCATG
  Y
  CAGGGGCCAG GTGACACCAG CTATGGCTAA TTGCCAAGTA AAGGAGACAC TGAGAAGTAA
  GTGGGTTCTA TAACCTTCTG GACCACTACA CTATCTATTG CAAGTGACAC TGGCTCAGAA
  GTATGAAGTT AAAAGTAGAT AGCTTTCATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342311	CHEV_2_72242198	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239819991					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72234485 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr50274	regulatory region 50274	885 bp distal
Rr62486	regulatory region 62486	within coordinates
Rr62487	regulatory region 62487	1317 bp proximal
Tssr18342	transcription start site region 18342	1111 bp upstream
Tssr18343	transcription start site region 18343	1197 bp upstream
Tssr18344	transcription start site region 18344	1557 bp upstream