rs239821767 SNP Detail

Summary

• ID
  rs239821767
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108535041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGGCAGG GGAAACTAGA
  GAACATGCCT GCTTTGTGGA AAGTAGTAGA CCTGAGTTGG GCCTGGACAG CAGATTGAGG
  GCTGAAGCAG AGCACCTGCA AAGGGGAGGC AGAGAGAGGC AGAGAGTGGA CGCAAGGAAA
  TAGAGCTCGC AGGTCAAGGC GTGACAGAAC TGCAGCATGA GAGGGGTTTG GGTGAGTTCT
  W
  GAGCTGCCGT TGTGCATACA AGAAGAAAGG ACAGAGTGTG GCTTGGGCTT GGTATTCCTT
  GTGAGGTGCC CCTGAGTGTA CCAGTGGGTT GGTCAAGTAG AAAATTGAGT AAGCAGGGCT
  GCCAGGGCGC TTCACTGCCT GCCCGTGCTT CACTTCCCAG AGCCCACATG ATGGAAGGAG
  AAAACCTGCA GACGGTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388650	CHEV_7_116079348	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239821767					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108535041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	925 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	1376 bp downstream
Rr652952	regulatory region 652952	1407 bp distal
Rr652953	regulatory region 652953	1664 bp distal
Tssr68456	transcription start site region 68456	1404 bp downstream
Tssr68457	transcription start site region 68457	1306 bp downstream