rs239821836 SNP Detail

Summary

• ID
  rs239821836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128616217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGCCTG ATTTTGGATT
  CCCAGCATCC ATTAAACACA AACGAACAAA CAAAAACAAA CCAGAACAGA AGATATGAAA
  CAAACAAACA AACAAACAAA CAAAACCAAG CAAACAAACA AAAAACAAAC AAACCAAACA
  GGTGCTAGAG TTTGGATCTA TAACCCCTGC CCTGAGGGAC CAGAAATGGG CAGATTCCTG
  R
  ATCTCAAAGA CCTGGCAGCC CAGCCAGACT GACGACGTCC AGTGTCAGTG AGACACCCTG
  TCTCAAATCA ATAGAGAGTG ATAGACACCT AGCTAGGACC TCTGCCTCAT CACACATGCA
  GACACACAAG CACATGTGCA CACACGCACA CACACATCCC AGATCATTAC CTCAGAGAGC
  CAGCCTTGTT AAAATGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321306932	CHEV_4_128399668	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239821836					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128616217 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	1830 bp distal
Rr600013	regulatory region 600013	977 bp distal
Rr600014	regulatory region 600014	1703 bp proximal
Tssr39071	transcription start site region 39071	233 bp downstream