rs239826125 SNP Detail

Summary

• ID
  rs239826125
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170786005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCAGGGA CTTGGATGAT
  TCTTTATTAA TTATTAATAT AATTCTTTAT ATTCTGGAGG CTGGGACCAG AATCTGGTAA
  AGGCTTTCTT GCCCTGTCAT TTCATGGGTT AAGAAGGGGG AAATGGAGCA GGAAGGAGAA
  ACAGAGCCAA AAGATAGCAA ACTCGCCCTT TTAGAAGGAA GCCACTCCCA CAAAACTAGC
  W
  CTCTGCTGTG GGCTAGTCAC CTCCCATCAG ACCCCACCTC CCTTGCATTG GGGACTGTTT
  CCAATGTATG GTTTCAGGGG AACAAATCTA AGCCACAGCA TCAAGAACGT CAAATAACAC
  CGGGTAGCTC AGTGGTAGAG CACTTGGCCA GCATGCAAGA ATATCAAATA ACCCAGAAAC
  TATGAGAGGC AAGTTTTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352376596	MGP_WTSI_1_172888567	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239826125					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376596	MGP_WTSI_1_172888567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170786005 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	181 bp downstream
Gm70986	predicted gene, 70986	120 bp upstream
Rr20517	regulatory region 20517	396 bp proximal
Rr20518	regulatory region 20518	996 bp proximal
Rr20519	regulatory region 20519	1395 bp proximal
Tssr284	transcription start site region 284	1458 bp downstream
Tssr14949	transcription start site region 14949	459 bp downstream
Tssr14950	transcription start site region 14950	1303 bp downstream
Tssr14951	transcription start site region 14951	1381 bp downstream
Tssr14952	transcription start site region 14952	1638 bp downstream
Tssr14953	transcription start site region 14953	1653 bp downstream