rs239826467 SNP Detail

Summary

• ID
  rs239826467
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76499061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAAAG AGAACAGGAC
  AGGAGTCAGG TGTCTGAACA GACCCATGGA AGGTTGTCTT CTTTCTCCAG AATGGCATGA
  GTGGCGTACC GTGTCCCATA CACTAGAGTT GCTGTTGTGG GGAGTATGGA GCTCAGAGTC
  TTGGTGGCTG GCTTTCCTGT CCGGATGACT GTGGTCAGCA TGATCACCGT GGTCATCATG
  G
  TCACTGTGGT CCTCTCCACC CACCCCAAGG TGATGCATCA AATTCTCCAG TTCTAGCAAG
  AAAAAACAAA AAGCAAAAAA CAAAAAAACA AAAACAAAAA CAGTGCAGTC AGTGCGCTCA
  GCTCCAGCCT TGTCCCCCCA TTCCCCAAGA GTAGCGGCTG ACGATCGTAG CCTAGGCCTC
  ACCATGCAGC GTGATATTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss394618291	MGP_WTSI_15_76445291	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs239826467					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394618291	MGP_WTSI_15_76445291	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76499061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	1418 bp distal
Gm62519	predicted gene, 62519	within coordinates
Gm62526	predicted gene, 62526	1788 bp upstream
Rr311946	regulatory region 311946	1660 bp distal
Rr311947	regulatory region 311947	1339 bp proximal
Rr390935	regulatory region 390935	1935 bp upstream
Slc39a4	solute carrier family 39 (zinc transporter), member 4	within coordinates
Tssr131805	transcription start site region 131805	1785 bp upstream
Tssr135020	transcription start site region 135020	1899 bp upstream
Tssr135021	transcription start site region 135021	1889 bp upstream
Tssr135022	transcription start site region 135022	610 bp upstream
Tssr135023	transcription start site region 135023	494 bp upstream
Tssr135024	transcription start site region 135024	180 bp downstream
Tssr135025	transcription start site region 135025	1051 bp downstream
Tssr135026	transcription start site region 135026	1597 bp downstream
Tssr135027	transcription start site region 135027	1964 bp downstream
Tssr135028	transcription start site region 135028	1980 bp downstream