rs239827222 SNP Detail

Summary

• ID
  rs239827222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108901261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGGCGT GAGCCACCAC
  TGCCCGGCAG TGTGTTGTCT TCTTAAGGAC ACCTGCAAGT CAGCAAGTAG CAGATCTAGG
  AGATTCGACA TGAACTGGTT GGGTTTCTAC CCGAGGATCA GTTGCTCCAG TTTTTCTAGA
  GTAAGAACAT TCTTCAGGTG TGAGACCTCC CATTTTAAAA CTGGGAAGTC AACATGGTGA
  Y
  ATATGCCTGT AATTCCAGCA CAGGAGGTAG AAACAGGAAG ATCACTGCTG TTTCAAGGAC
  AGCCTGGTCT ATAGAGTGAA ATCTGGGCTA GTCAGAGCTC TACAGAGAGA CCCTGTCCCA
  CCCCCATCCC CCCAAAAAAG GGCATAAACA ACAATCAAGC ACACAAATCA GGATGAATTC
  GTATTCAAAT TTGGTAAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384648962	MGP_WTSI_11_108871749	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239827222					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384648962	MGP_WTSI_11_108871749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108901261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	1207 bp proximal
Gm11668	predicted gene 11668	1654 bp downstream
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	1280 bp upstream
Tssr105628	transcription start site region 105628	1380 bp upstream
Tssr105629	transcription start site region 105629	1396 bp upstream
Tssr105630	transcription start site region 105630	1434 bp upstream
Tssr105631	transcription start site region 105631	1551 bp upstream
Tssr111515	transcription start site region 111515	1270 bp downstream
Tssr111516	transcription start site region 111516	1336 bp downstream
Tssr111517	transcription start site region 111517	1405 bp downstream
Tssr111518	transcription start site region 111518	1425 bp downstream
Tssr111519	transcription start site region 111519	1438 bp downstream
Tssr111520	transcription start site region 111520	1468 bp downstream
Tssr111521	transcription start site region 111521	1553 bp downstream