rs239831007 SNP Detail

Summary

• ID
  rs239831007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:66827779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCAAATG CGATGATCAT
  TTTAGAGGCT CTGCTTCATA GATACCGCCT CGCGCACCGC GGGAGGATGA ATTCTTGAGA
  AAGAAAGAAA GAAAGAGAGA GAGAGAGAGA GAGAGAGGGA GGGAGGGAGG GAGGGAGGGA
  GGGAGGGAGG GAGGGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  R
  AGAAAGAAAG AAAGAGAGGA GAGGGGAGAG AGGGGAGAGA GGGAGAAGAG AAGAGAAGAG
  AAGAGAAGAT AAGATAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG AAGAGAAGAG
  AAGAAAGATG TGGGAAGGCT TGTGCTACGA ACAGCTTATA AAATAGCGCC ACCTGAGACA
  GGTGACGGGA ACTTTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	ST/bJ	SWR/J
ss377893217	MGP_WTSI_9_66768304	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	SEA/GnJ	ST/bJ	SWR/J
rs239831007					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377893217	MGP_WTSI_9_66768304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:66827779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21974	CpG island 21974	554 bp distal
Rab8b	RAB8B, member RAS oncogene family	810 bp upstream
Rr368814	regulatory region 368814	911 bp downstream
Rr401489	regulatory region 401489	523 bp downstream
Rr681814	regulatory region 681814	320 bp distal
Rr681815	regulatory region 681815	1772 bp proximal
Tssr85773	transcription start site region 85773	1635 bp downstream
Tssr85774	transcription start site region 85774	1615 bp downstream
Tssr90295	transcription start site region 90295	1300 bp upstream
Tssr90296	transcription start site region 90296	787 bp upstream