rs239834477 SNP Detail

Summary

• ID
  rs239834477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115218863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGGCTT GGTTGGGCTC
  CCTTTGTTAC AGCTCACTCA GCTCCCCTCT TCCAGTGCTC CTGTACCCCT GTACCCACAA
  TGACGGATGC ATCAGTGTTT ATTTCAGTTG ACATGTAACG TAATTTCCCC ATGAAGGAAA
  CAGCAGATAG ATTTAACATT CTATAAGGCT TCCTTCTCAT CAAATTCCTC TCTGGCGATG
  Y
  GCAACTGGCA CTTTAAGTAT CACTCTTAAC TCTCTGCAGC AGCCAGAAGG CTTTTTATTA
  TGTAAATCTA ACCGTGCCCG TCTTTTCATA GTCATGGGGC TTCTTCAAGT ACTCTTGGAA
  CAAAGTAGAA AACGCTTTAA TATAGAAGAC CAAATCTCTG TCATCCTTTG GTGTCATCTG
  ACATGTCACC TCTTTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381866100	MGP_WTSI_10_114820014	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239834477					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381866100	MGP_WTSI_10_114820014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115218863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	1077 bp proximal
Rr402239	regulatory region 402239	1770 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	1335 bp proximal
Rr439215	regulatory region 439215	1442 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	959 bp upstream
Tssr95814	transcription start site region 95814	1963 bp upstream
Tssr95815	transcription start site region 95815	1993 bp upstream
Tssr99330	transcription start site region 99330	1368 bp downstream
Tssr99331	transcription start site region 99331	1379 bp downstream
Tssr99332	transcription start site region 99332	1430 bp downstream
Tssr99333	transcription start site region 99333	1518 bp downstream
Tssr99334	transcription start site region 99334	1558 bp downstream
Tssr99335	transcription start site region 99335	1793 bp downstream