rs239843731 SNP Detail

Summary

• ID
  rs239843731
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115631569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGTTTGT GTACTGCTGA
  GAGGACCATT AAAAGTAAAG TGCAATAGTG GAGGGAGCAA GGGGAACTGG AACTCGAGCG
  TCCCGGGAAA GTCGTGGGAA GCCCCGGTGG TGGAGGGCGA GGAGGGAGCG CGCGGCTTCT
  AGCCACCCGG GTTTTCTTTA ATCCTCCGGG TAAATTTCAC CCCTAGCGCG GAGAGCTACG
  R
  AGATCCTGGA GTCCCGCCCG CCCTAGGCCA GCGTCAACCC CACAACTAGC CAACGATCCC
  AGTCCGAAAT GGGGGAGGTT CAGAAGCCCT GCGGGTCCTC CCGGCCCCTG AGCCACAGCC
  TGGCTAACAC TGACGCCTCT TAGAACTGCG GCGGCGCAGT CACACGGCAA ATCGACACTT
  TTCAAGAAAA CAAAATATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372831565	MGP_WTSI_7_123175848	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239843731					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372831565	MGP_WTSI_7_123175848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115631569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19603	CpG island 19603	within coordinates
Cpgi19604	CpG island 19604	1130 bp proximal
Rr654127	regulatory region 654127	1298 bp distal
Rr654128	regulatory region 654128	502 bp distal
Rr654129	regulatory region 654129	764 bp proximal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Sox6os	SRY (sex determining region Y)-box 6, opposite strand	within coordinates
Tssr68686	transcription start site region 68686	402 bp downstream
Tssr68687	transcription start site region 68687	325 bp downstream
Tssr74377	transcription start site region 74377	1334 bp upstream
Tssr74378	transcription start site region 74378	1212 bp upstream
Tssr74379	transcription start site region 74379	1272 bp downstream
Tssr74380	transcription start site region 74380	1477 bp downstream
Tssr74381	transcription start site region 74381	1529 bp downstream
Tssr74382	transcription start site region 74382	1975 bp downstream