rs239843869 SNP Detail

Summary

• ID
  rs239843869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT AGTATGAGCT TACCTTTCCT
  R
  AGCACAGATA CCCTCTATGC CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323193700	CHEV_9_110557586	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239843869					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484150 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	1421 bp upstream
Cpgi22385	CpG island 22385	642 bp distal
Cpgi22386	CpG island 22386	1245 bp proximal
Gm42470	predicted gene 42470	597 bp upstream
Gm69744	predicted gene, 69744	within coordinates
Nbeal2	neurobeachin-like 2	921 bp upstream
Rr401701	regulatory region 401701	703 bp downstream
Rr401702	regulatory region 401702	1244 bp upstream
Tssr87398	transcription start site region 87398	1384 bp upstream
Tssr87399	transcription start site region 87399	1412 bp upstream
Tssr91642	transcription start site region 91642	1077 bp upstream
Tssr91643	transcription start site region 91643	1001 bp upstream
Tssr91644	transcription start site region 91644	870 bp upstream
Tssr91645	transcription start site region 91645	828 bp upstream
Tssr91646	transcription start site region 91646	1300 bp downstream