rs239845388 SNP Detail

Summary

• ID
  rs239845388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4169632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATATATA TAATGTAATT
  ATGATGTTTG TAACATGTGA CAGATATGAC ATATGTGACA GGTCAAGGGG GCAATGAACA
  CACACAACTC CTGTCCGTGT GGTGAGGTAA CCCAGGCAGG GGCTCAGAGG CTAGTGTGAG
  GATGTCATTG ATTCAATTCA TTCTGCCAAC TACAATGACC CTCAGAGATC ATCCAAGAGC
  W
  GTGGTGCTCA ATTTGTGGGT CAACACCCCT TTGGGGGGGG TCAAAAAACC TTCCCATAAG
  CATCAGTTAT CAGATATCCT CCCTATCTGG TATTTACATC ACAACTCATA ACAGTAGTGA
  AATTACAGTT ATGGAGTAGC AACAAAAAAT GATTTTATGG TTGAGGTCAC CACAACATGA
  GGAACTGTAT TAAAGGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370559880	MGP_WTSI_7_4118235	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239845388					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370559880	MGP_WTSI_7_4118235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4169632 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep5	CDC42 effector protein 5	1802 bp upstream
Gm73056	predicted gene, 73056	within coordinates
Rr641924	regulatory region 641924	1784 bp distal
Rr641925	regulatory region 641925	1283 bp distal
Rr641926	regulatory region 641926	within coordinates
Rr641927	regulatory region 641927	141 bp proximal
Tssr70454	transcription start site region 70454	1958 bp upstream
Tssr70455	transcription start site region 70455	1918 bp upstream
Tssr70456	transcription start site region 70456	1892 bp upstream
Tssr70457	transcription start site region 70457	1806 bp upstream
Tssr70458	transcription start site region 70458	1572 bp upstream