rs239854603 SNP Detail

Summary

• ID
  rs239854603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCCCT TCACAGCAGG
  GCAGAGGAAA GAGGTGGAGT TTGGATGCCT TGTGACCCCC CGCTCCCCTC CCCCGCCAAC
  AAAGGGAGCG GACACCTCAT TGAATAATCC AGGCCTTGGT ACTGGGGCAC TGAGAACCGC
  TCCTTCCCTT TCCCCGCGGG GTCTGGTGCA TTGTAAAGAA AAGAGCTGGC AGCCTAAATG
  R
  AAATGGGTGG GTGGGGGCTA AGAGGCTCAG CTTCTGGGGT GAAGATCGTT GTTCTGGGAT
  CCCTCGTTGT TGATTCCTCC ACCACAGGTG AACTCTTTCC ATTCCAAGGC TGGGACGTGC
  TCCAGTTCCT TCAGGAGCTG TTCAGTGGTG GCTCCCGATG GGTTTGAAGC CATACATTAA
  GCCAAGCCCT GGGAAACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754833	MGP_WTSI_7_20284708	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239854603					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754833	MGP_WTSI_7_20284708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433284 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	558 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1440 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	462 bp distal
Rr643243	regulatory region 643243	1063 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	971 bp proximal
Rr643246	regulatory region 643246	1897 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1954 bp downstream
Tssr2122	transcription start site region 2122	1694 bp upstream
Tssr64894	transcription start site region 64894	1861 bp downstream
Tssr64895	transcription start site region 64895	1782 bp downstream
Tssr64896	transcription start site region 64896	1758 bp downstream
Tssr64897	transcription start site region 64897	1950 bp upstream
Tssr71000	transcription start site region 71000	1837 bp upstream
Tssr71001	transcription start site region 71001	1771 bp upstream
Tssr71002	transcription start site region 71002	1752 bp upstream
Tssr71003	transcription start site region 71003	1724 bp upstream
Tssr71004	transcription start site region 71004	1706 bp upstream
Tssr71005	transcription start site region 71005	1361 bp upstream
Tssr71006	transcription start site region 71006	1328 bp upstream
Tssr71007	transcription start site region 71007	1266 bp upstream
Tssr71008	transcription start site region 71008	1160 bp upstream
Tssr71009	transcription start site region 71009	1098 bp upstream
Tssr71010	transcription start site region 71010	978 bp upstream
Tssr71011	transcription start site region 71011	954 bp upstream
Tssr71012	transcription start site region 71012	924 bp upstream
Tssr71013	transcription start site region 71013	296 bp upstream
Tssr71014	transcription start site region 71014	235 bp downstream
Tssr71015	transcription start site region 71015	360 bp downstream
Tssr71016	transcription start site region 71016	596 bp downstream
Tssr71017	transcription start site region 71017	1045 bp downstream
Tssr71018	transcription start site region 71018	1086 bp downstream