rs239857994 SNP Detail

Summary

• ID
  rs239857994
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108256077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGAGA TCCCTGGAAA
  AGCAGTAAGC CTGGATTCTC AGGCAGGGTT GAGATCAGAC TCTGGGGGGT GCGGGTGGGG
  CTTCTGCAAG GTCAGGGCCA CGTAGTTGTT TGTTTAACAT AGTGAAGAGC CAAGTAGGAA
  AAGATATGCC CTTGGAGGTT GCTGGGGAAC GCCTGTGGCA CACACCCTCC CCCTCTCCCC
  C
  CCTCCCCCCA TCCCCCCATC CCCCCAACGC TCCTGCCTCG CCCCACCCCA GAGCTGGAAC
  TTTGGGCTTC AGAGACTCAT TGTGGCACAG TGTATCTCTC TGCGGGGATT GTTTGCTTAG
  TGACACATCT TCCTGATACC TTGTGGTCAT TCAACTGGCT AGGCTGGAAG TGTGTGCCAG
  CTTACTGAGT CAGCTGCTGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384635068	MGP_WTSI_11_108226565	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	DBA/2J	FVB/NJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239857994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384635068	MGP_WTSI_11_108226565	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108256077 () rs orientation: forward

Symbol	Name	Function Class
Gm36709	predicted gene, 36709	1579 bp downstream