rs239858391 SNP Detail

Summary

• ID
  rs239858391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:45005780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCGGCC CCCAATAGTT
  AGCACTGAGT TTCGACTTTT CCCATATATT GGTATGGAAA AAAAAAAAAC AGATCAAAAC
  AAAACAAAAC CAACTTCAAT TTTCTAGGTT CACATGGAGG TGGACGTTTG GGTAGTGGTA
  CAGGGAAGAT CGCGAGGGCT GAGAGAGGGG CTAGGTTGCC CACTGCCCTT GCTTGGCACG
  Y
  CCCTCCCCAA GCTTCTGAGC GAGAGAGTGT TCCCACCATC GCAGAAGCAG CGGAATCAGA
  GGAAGCTGGA ATATAAATTT GTTCGGAACA CTCCCTCAGT TCCAGGGCCA GGTCAGGGAC
  AATGGGGACC GTGGGATCCA CATAATACAG GAGCGCAGGA CGAAAAGTCC AGAGGGGACC
  AGGGACAGCT CTGAGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353808077	MGP_WTSI_2_44971288	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239858391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353808077	MGP_WTSI_2_44971288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:45005780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11634	CpG island 11634	906 bp proximal
Gm56477	predicted gene, 56477	1784 bp downstream
Rr373117	regulatory region 373117	within coordinates
Rr556441	regulatory region 556441	1999 bp distal
Rr556443	regulatory region 556443	760 bp distal
Rr556444	regulatory region 556444	within coordinates
Rr556445	regulatory region 556445	1617 bp proximal
Tssr17636	transcription start site region 17636	1463 bp upstream
Tssr23986	transcription start site region 23986	1841 bp upstream
Tssr23987	transcription start site region 23987	1816 bp upstream
Tssr23988	transcription start site region 23988	1196 bp downstream
Tssr23989	transcription start site region 23989	1533 bp downstream
Tssr23990	transcription start site region 23990	1581 bp downstream
Tssr23991	transcription start site region 23991	1632 bp downstream
Tssr23992	transcription start site region 23992	1658 bp downstream
Tssr23993	transcription start site region 23993	1755 bp downstream
Zeb2	zinc finger E-box binding homeobox 2	Intron
Zeb2os	zinc finger E-box binding homeobox 2, opposite strand	1681 bp downstream