rs239861625 SNP Detail

Summary

• ID
  rs239861625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGCTAGT TGCTTCCTCC
  CCATTCCCAC CCCAGGAAGT CCTAAAGTTA CTAGGAACTA CTCTGGACTC CTACACACTG
  AGTGCGCATC GGACAGAAAT TAAAGCGCAC ACCGCGCACT AAAACTTACA ACTAGCCGGA
  AATTTCATGT CCAATAGTCA TCAAGATATG ATTCACGTGG TATAAATTTA GCCAATCAAA
  Y
  TTCTAATTCC TCCAACTCAC GCTCTTCTGT TCTAGGCTCT CTCTCTTTCT CGGCAAGATG
  GCTTCTCCGG CCGTACCGGC TAATGTCCCT CCTGCCACTG CAGCCGCAGC CCCGGCGCCG
  GTCGTCACCG CAGCCCCGGC TTCAGCCCCG ACCCCATCCA CGCCAGCTCC GACACCGGCT
  GCGACTCCCG CTGCGTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388633	CHEV_7_116077888	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239861625					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	within coordinates
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1440 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	41 bp upstream
Rr400539	regulatory region 400539	within coordinates
Rr652951	regulatory region 652951	1671 bp distal
Rr652952	regulatory region 652952	within coordinates
Rr652953	regulatory region 652953	204 bp distal
Tssr68456	transcription start site region 68456	31 bp upstream
Tssr68457	transcription start site region 68457	143 bp upstream