rs239869561 SNP Detail

Summary

• ID
  rs239869561
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135694893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGCCAAG TGAGCAGAGC AGGCCCTTTC CCTAGGGCAC
  CAGGCAGGAG GGTCCTTAAT GTAACCCAAG TGTCGGAGAG GAAGATGGGT GGGAGCACGG
  A
  GAGAGAGCAC GGGTGGGATA GGCCTCCTCA GAGATTGGTT CACTCACCAT AGGACTCCTG
  CGTTGTATGA CTGTCTTCCA GAATGAATGC ATGCTGGAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	SEA/GnJ	SPRET/EiJ
ss351549759	MGP_WTSI_1_137663732	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LP/J	SEA/GnJ	SPRET/EiJ
rs239869561					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351549759	MGP_WTSI_1_137663732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135694893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	177 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	208 bp downstream
Tssr223	transcription start site region 223	1076 bp downstream
Tssr224	transcription start site region 224	954 bp downstream
Tssr8974	transcription start site region 8974	980 bp downstream
Tssr8975	transcription start site region 8975	947 bp downstream
Tssr8976	transcription start site region 8976	930 bp downstream
Tssr8977	transcription start site region 8977	915 bp downstream
Tssr8978	transcription start site region 8978	898 bp downstream
Tssr8979	transcription start site region 8979	654 bp upstream