rs239873517 SNP Detail

Summary

• ID
  rs239873517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTCAAC TTCAAAAAAA
  AATTTTTTTA AGACATCAAA TGTTGCACTT GCAAAAATAA AGAAGTCATT CGTTTGTGCG
  CCCACAACTG GAATGAAACT AACTGAAGAA AAAAGGAAAA TCAAAGAAAA AGAAATGACC
  AGAAACAAGA CTAACATTTT TAGTTTCCTA AAAGTTTCTC AGCCGGGCAT CGTGGCCCAC
  R
  CCTTTAATCC CAGCACTCCG GAGGCAGAGA CAGGTGGATC TCTGAGTTCG AGGCCAGCCT
  GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTATGCAG AGAAACCCCG TTATGAAAAG
  ATTTTTGGTT ATGTCCAATA ATTAAGCAAA AACCAAATAC TCTACCGGGC AGTGGTGGAG
  CACACCTTTA ATCCCAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381242967	MGP_WTSI_10_90543990	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239873517					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381242967	MGP_WTSI_10_90543990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917107 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	938 bp proximal
Ikbip	IKBKB interacting protein	1695 bp upstream
Rr402144	regulatory region 402144	1609 bp upstream
Rr436975	regulatory region 436975	1460 bp distal
Rr436976	regulatory region 436976	490 bp proximal
Rr436977	regulatory region 436977	1174 bp proximal
Tssr95222	transcription start site region 95222	846 bp upstream
Tssr95223	transcription start site region 95223	1779 bp upstream
Tssr95224	transcription start site region 95224	1791 bp upstream
Tssr95225	transcription start site region 95225	1836 bp upstream
Tssr98900	transcription start site region 98900	1311 bp downstream
Tssr98901	transcription start site region 98901	1408 bp downstream
Tssr98902	transcription start site region 98902	1438 bp downstream
Tssr98903	transcription start site region 98903	1459 bp downstream
Tssr98904	transcription start site region 98904	1538 bp downstream