rs239883989 SNP Detail

Summary

• ID
  rs239883989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTAAA TAATAACTAA
  GAAAACAGAT GTTGACAATC TGTCAAAATA GTGGCTATAA GTGCCACTTA ATATGCATTT
  ACATAGTAAG TTCTAGTGGT ACAGATAAAA TTACACTCCT TGGCCTGTTT ATGGTGCACA
  CCTTTAAACC CAGCACTTAG GAGGCAGAGG CAGGTGGATC TCTGTGAGTT CAAGGTCAGC
  Y
  TGGAGTGTAT AGTGAGTTCC AGAACAACCT GGGCTTCATA GACAAACCCT ATCTCAAAAA
  ACAAAAACAA CCCCACAAAC AACAAAAGTC ACAGCCCTCA TCGCCACTGT CGGGCTCCTC
  ACCCCCTTCA CTTGGTTTCT TAATGACCCC CTCCCTCATC TTTAGACAGC ACCATGACGA
  TGTTTTCTCT GCCTCTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391148741	MGP_WTSI_14_55635553	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239883989					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391148741	MGP_WTSI_14_55635553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	622 bp distal
Gm63347	predicted gene, 63347	915 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1522 bp downstream
Rr369831	regulatory region 369831	1093 bp downstream
Rr492392	regulatory region 492392	1252 bp distal
Rr492393	regulatory region 492393	1549 bp distal
Rr492394	regulatory region 492394	926 bp distal
Rr492395	regulatory region 492395	434 bp distal
Rr492396	regulatory region 492396	537 bp distal
Tssr125743	transcription start site region 125743	1145 bp downstream