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rs239886187 SNP Detail
Summary
  • ID
    rs239886187
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:67608023 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGTGACAGG TGCTATCTGA
    GCACCAGAAA TGAACGCCTT TCAGTAGTAC TAAGTATGTA ATACTTCCAC ACGTGCTGTG
    GCCACGGCGG CTCTTGGCTT CTCCGTCTGA GACGCCCGAT GCACGTGAAA GACAGCAAAC
    AGGCTGTACG GTGTGATGAT GCACTCGGAG CTTCCTGTAA GTAGTGTTTG GCAGCAGGTC
    Y
    GCAAGAGGAA GTTTCCAAGT TCCTTATAAA GACGTGTTAT TTGGGACGGG CGCAGTCCTA
    GTGTTCGGTG ACGCTGAGAT CTGTGGACAT TGGGGAGTGC GTGGCTGATG TCCAGGATTG
    GTAAAGATTA AAGATTAGAA TGTGTACAGG TGCCTTGTCT CGATCCCCTC ACCCCCTGGG
    TCTGACTTGT TCAGAGAAGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss322244746 CHEV_7_75103161 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs239886187 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:67608023 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi19234 CpG island 19234 within coordinates
Igf1r insulin-like growth factor I receptor within coordinates
Tssr67104 transcription start site region 67104 51 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory