rs239892404 SNP Detail

Summary

• ID
  rs239892404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35726190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTACC AAGAAAGGAA
  GGTGGTACAA TGACTTGAGC CAGGCAGCCT CTTGGAGCAT CTCTCAGGCT CTTCTGTTCG
  TTTGAAAGAT GTAGCCCAGG GTAGTCTTGC ATTTAGCTGA GCTTCTGATC TTTTGTCTTG
  AACTTCTGAT CTTTTTCTTT CCACCTTCCA AGGGTCGTGG TAACGTGGTT TTACCACCAA
  R
  ATGGATTTAG TTCACGTTAA AATTTACTTA TCTTCATCCT AAACAATAAT ATCTATGAAT
  CCATGGGCTG AGTGTGTGGG CTAAAGATGC TACATATTAA ATAAATATAG GACTTGAGAG
  GTGGCTCAGT GGTTGAGAGC ACTGGCTGTT TTTTTTTCCC CCAGAGGTCC TAGTTTGATC
  CCAGTATTCA CATGGCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990277	MGP_WTSI_11_35648865	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239892404					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990277	MGP_WTSI_11_35648865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35726190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	619 bp distal
Rars1	arginyl-tRNA synthetase 1	857 bp upstream
Rr402482	regulatory region 402482	692 bp downstream
Rr445141	regulatory region 445141	1680 bp distal
Rr445142	regulatory region 445142	868 bp distal
Rr445143	regulatory region 445143	1119 bp distal
Rr445144	regulatory region 445144	391 bp distal
Rr445145	regulatory region 445145	744 bp distal
Rr445146	regulatory region 445146	1961 bp proximal
Tssr3462	transcription start site region 3462	981 bp upstream
Tssr3463	transcription start site region 3463	887 bp upstream
Tssr107408	transcription start site region 107408	854 bp upstream
Tssr107409	transcription start site region 107409	833 bp upstream
Tssr107410	transcription start site region 107410	664 bp downstream