rs239895561 SNP Detail

Summary

• ID
  rs239895561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25352094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTAGTTT TGCTCAACCC
  TGCTGAGGCT CCGGACTAGA GCCTTTGCGT GCATGGGTTT TTGCCTGTCT CCAGCCGGGT
  GTACTTACCT GTAGTTCTTT TGAAAGTGTC CTCTTGAGGA TCCATGTAGA ACATTTCACC
  TCTGCTCAAG TCTCCATCCC TCTCTCCCAT GTCTTACTTT CCCTGCTTTT CACTGTGTAC
  Y
  GTACATCCTG GTTTTAGGAG TTTCTGGCTC AGCCTTGATG TCTGCCTGCA TCTCCACCAT
  TGTCTGACCC CCTCCTAGAA GCTGCATCTA AGGTCTTGCT TCTATTCTAG CCACTGGAAT
  ATGGCAGAAA TGATGTCTGT CATTTCTCCC ATCCCTACTG CATTGCTCAC CACAGCACAA
  GGCAACCCAG GAAAACCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353409480	MGP_WTSI_2_25317602	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239895561					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353409480	MGP_WTSI_2_25317602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25352094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	778 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	988 bp upstream
Rr56431	regulatory region 56431	293 bp distal
Rr396822	regulatory region 396822	888 bp downstream
Tssr16724	transcription start site region 16724	861 bp downstream
Tssr22977	transcription start site region 22977	1151 bp upstream
Tssr22978	transcription start site region 22978	1123 bp upstream
Tssr22979	transcription start site region 22979	1099 bp upstream
Tssr22980	transcription start site region 22980	1078 bp upstream
Tssr22981	transcription start site region 22981	1042 bp upstream
Tssr22982	transcription start site region 22982	1002 bp upstream
Tssr22983	transcription start site region 22983	970 bp upstream
Tssr22984	transcription start site region 22984	953 bp upstream