rs239897822 SNP Detail

Summary

• ID
  rs239897822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54813232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCACAC ACCTCACCAT
  CAGGACTGGG GCGGGACCGG GCAGGACTTG AATCCTTGCT TTCCTATCAG GCTTCCCTAT
  CAGGCTCCAT TTCCCCGACA GCAGGCAAGA CTGCGCGGGA GCTAGCAAAC ATCCCCCAAC
  GCAAGCACAC GCTCCCCACC CCTCCGCCTG GCGGGCGTCG CCCACGGCAC CTGGAGCGCC
  R
  GGGCAGGAGT CGGCACGCAC GCGGCCGCCC GCCCCGCCCC CCGCGCATTC CCCGAATTCC
  TACGGGTGGA GCAAGGAGCG GGTGGGGGCG CGGCACGCCG GAGCTTGCAG GAGCCCAGCC
  GCGAGGGGGG CGCGAGAGGA TGCTCTCCTG GCCCCGCAGC GCCTCCTCCT CCTTCCGAGG
  CCTCCTACTG CGACAGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391139389	MGP_WTSI_14_55194612	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239897822					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391139389	MGP_WTSI_14_55194612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54813232 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	1820 bp upstream
Rr389676	regulatory region 389676	1768 bp downstream
Rr389677	regulatory region 389677	within coordinates
Rr492272	regulatory region 492272	1837 bp distal
Rr492273	regulatory region 492273	1773 bp proximal
Rr492274	regulatory region 492274	1886 bp proximal
Tssr128601	transcription start site region 128601	67 bp upstream
Tssr128602	transcription start site region 128602	1705 bp downstream
Tssr128603	transcription start site region 128603	1752 bp downstream
Tssr128604	transcription start site region 128604	1768 bp downstream
Tssr128605	transcription start site region 128605	1786 bp downstream
Tssr128606	transcription start site region 128606	1803 bp downstream