rs239900992 SNP Detail

Summary

• ID
  rs239900992
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGCGTG TCACCGATGG
  AGCTCTGGTG GTGGTGGACT GTGTGTCTGG TAAGCCTTGG GTGGGAGCTG TAACAGACAG
  TTGCTGGTGT TTTCATGGCC CAGTACCACA TTTTTGGGGG TGTAAATTGA AATCATATTC
  ATTTTAAGGC AAGGATGAAT TCTGCTCTAA TTTGAAATTG TATGTGCCAG TCCCCATGTC
  W
  GGGCAGGGAG ATTGTGAAGT CCACCTAAGT GTGGGGCCAG TTTCCTATAA TTTCAGTGCT
  CTGAGGCAGA GGTGCATGGG TCTCTGGAGG TGGGAGGGGC TGAGTGGCAT AGGGCCTGGT
  ACACTGGACA CACTTGGAGA TTTAGCGCCT GGGCATCCAT ACCGTGTACC TTGGAGAGTG
  CTTGTGTACA TTTCACAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032036	MGP_WTSI_10_80641131	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239900992					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032036	MGP_WTSI_10_80641131	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	210 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	1317 bp upstream
Rr402079	regulatory region 402079	1706 bp downstream
Rr435542	regulatory region 435542	1745 bp distal
Rr435543	regulatory region 435543	1328 bp distal
Rr435544	regulatory region 435544	827 bp distal
Rr435545	regulatory region 435545	1289 bp proximal
Rr435546	regulatory region 435546	1781 bp proximal
Snord37	small nucleolar RNA, C/D box 37	575 bp upstream
Tssr94695	transcription start site region 94695	1738 bp downstream
Tssr94696	transcription start site region 94696	649 bp downstream
Tssr94697	transcription start site region 94697	549 bp downstream
Tssr94698	transcription start site region 94698	298 bp downstream
Tssr94699	transcription start site region 94699	764 bp upstream
Tssr94700	transcription start site region 94700	948 bp upstream
Tssr94701	transcription start site region 94701	1008 bp upstream
Tssr94702	transcription start site region 94702	1185 bp upstream
Tssr94703	transcription start site region 94703	1248 bp upstream
Tssr94704	transcription start site region 94704	1267 bp upstream
Tssr94705	transcription start site region 94705	1295 bp upstream
Tssr94706	transcription start site region 94706	1487 bp upstream
Tssr94707	transcription start site region 94707	1537 bp upstream
Tssr94708	transcription start site region 94708	1602 bp upstream
Tssr94709	transcription start site region 94709	1856 bp upstream
Tssr98570	transcription start site region 98570	992 bp downstream
Tssr98571	transcription start site region 98571	1360 bp downstream