rs239914514 SNP Detail

Summary

• ID
  rs239914514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46388189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGTCAT AAAAATTCAT
  AAATTATATT AATACATGTG TTGATTGTAT ATTATGCAGT ATAAACTATA ATTTATAATT
  ATTTCTTTTT ATGTTCTTTA TAGGGACACT CCAGATCTCC ATTTTATTTA ATTTGCATCA
  AACCTATCTA TCCTATTATA TCTTATTAGC ACAACCAGTA AGATCTAGCA CTAACTCTCA
  Y
  AATATGTTTC CTTGCTTTTT GCTTATACAA ACTCTTTTTA CTGTTGTGAT GTATTAGACC
  TATTTTAAAT CCTTGGGAGA CAGAGGCAGG CAGATCCCTG AGTTGGAGGT AAGCCAGAGC
  TACGAACACA CAATTTTTTT TTTTTTAAAG TCTTTAGGTG TAGCTCAGGT ATACCCAGAA
  CCCTTCCTGC CACAAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361390507	MGP_WTSI_4_46401061	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239914514					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361390507	MGP_WTSI_4_46401061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46388189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	806 bp proximal
Gm69592	predicted gene, 69592	1010 bp upstream
Rr376425	regulatory region 376425	433 bp upstream
Rr591600	regulatory region 591600	520 bp proximal
Rr591601	regulatory region 591601	825 bp proximal
Rr591602	regulatory region 591602	1101 bp proximal
Rr591603	regulatory region 591603	1224 bp proximal
Rr591604	regulatory region 591604	1281 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr37118	transcription start site region 37118	1272 bp upstream
Tssr41564	transcription start site region 41564	914 bp downstream
Tssr41565	transcription start site region 41565	1202 bp downstream