rs239914781 SNP Detail

Summary

• ID
  rs239914781
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144941869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAGAAGG TCAGGAGGAG
  GAGCTCCAGC CCTCTGTGTG CCCACCAGAG TAAAAGTCAA AGGCAGAGGC TGCAAACCAC
  ACAGGGGGCT GGCTGTGCTG TCTGCTGTCT GCTGTCTACT TACGTTTTGC ATGTGTTGCT
  GAGGATCAAA CCCAGGGCAT GCTAAAAGCA CACTGGACCA CTGAGTTACA GCCCTACCAT
  S
  CTATAACAGA GCAACTCTGC CTGATGGGGC CTCTGATTCT TGCATCAAAA GAATTTCGGT
  GGGCTTGGAG AGGGTACTTC CTAAGAGTTT AGCACTAACC TGAAGGGCCT CTGTGCCCTA
  CCAGGCCACC ACTTGCTCCT ACTTGCTGGA ACCGCCCTGC AGTGTCAGCA TTCAGGCTGA
  AGAGCTGTGC TATTCATGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595786	MGP_WTSI_4_144805202	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239914781					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595786	MGP_WTSI_4_144805202	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144941869 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	269 bp distal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	1329 bp downstream
Tssr40195	transcription start site region 40195	1000 bp downstream
Tssr44486	transcription start site region 44486	1626 bp upstream
Tssr44487	transcription start site region 44487	1571 bp upstream
Tssr44488	transcription start site region 44488	1454 bp upstream
Tssr44489	transcription start site region 44489	1378 bp upstream
Tssr44490	transcription start site region 44490	1082 bp upstream
Tssr44491	transcription start site region 44491	904 bp upstream
Tssr44492	transcription start site region 44492	688 bp upstream
Tssr44493	transcription start site region 44493	535 bp upstream
Tssr44494	transcription start site region 44494	291 bp upstream
Tssr44495	transcription start site region 44495	237 bp upstream
Tssr44496	transcription start site region 44496	166 bp upstream
Tssr44497	transcription start site region 44497	48 bp upstream
Tssr44498	transcription start site region 44498	64 bp downstream
Tssr44499	transcription start site region 44499	107 bp downstream
Tssr44500	transcription start site region 44500	195 bp downstream
Tssr44501	transcription start site region 44501	255 bp downstream
Tssr44502	transcription start site region 44502	351 bp downstream
Tssr44503	transcription start site region 44503	467 bp downstream
Tssr44504	transcription start site region 44504	533 bp downstream