rs239917883 SNP Detail

Summary

• ID
  rs239917883
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35963908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCCAA TCATTGTAGC
  TTGCGGGCGC CGGGGGTCCT CACCTCGCAG TGCTGGGCGG GTGCTGCGCC TGCGGGGGCG
  GCTGCTTGCA GGTCTGCGGC GCACACTCCC CGCATCAGAC CCCACTCGCT GCCCTGTGTA
  TAGGGACGTT CATAACTGCC CCGAGAGCCT CGGACCACGC GTGGCCTTGC CTCCCCTTAG
  W
  CTTGGAAGAG GCGGCGGCTA CTTCTGTTTT TTCCCCTCGG GCTGCTCGCC CCCACTGCCT
  GCAGGGTGCC TGGCGGGCTG ATCAAGTTTG ACCTTTTTTT TTTTTTTTTT TTTTTTCCCG
  TCAAAGTATA TCACCTCCAC CTCCGCCGGC TAGGCGGCCT CTCTTCTGTC CTTTTCGGCC
  TTGGGGAGTC TCGGACTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400266038	MGP_WTSI_18_35990509	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239917883					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266038	MGP_WTSI_18_35990509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35963908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	443 bp proximal
Cpgi9846	CpG island 9846	778 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	within coordinates
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	1295 bp upstream
Tssr150567	transcription start site region 150567	1987 bp downstream
Tssr150568	transcription start site region 150568	1099 bp downstream
Tssr150569	transcription start site region 150569	1060 bp downstream
Tssr150570	transcription start site region 150570	1034 bp downstream
Tssr150571	transcription start site region 150571	1016 bp downstream
Tssr150572	transcription start site region 150572	1004 bp downstream
Tssr150573	transcription start site region 150573	744 bp downstream
Tssr150574	transcription start site region 150574	647 bp downstream
Tssr150575	transcription start site region 150575	492 bp downstream
Tssr150576	transcription start site region 150576	116 bp upstream
Tssr152918	transcription start site region 152918	718 bp upstream