rs239920562 SNP Detail

Summary

• ID
  rs239920562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63218112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTCCTG AGAACTCAGT
  GGTGGGGACC AAGTCGGATT CAGACTAATA TCACAGAACG TTGGACATGG CTCAGATTGT
  AAGAGTGCTT GCAAGCAAGG TTGACCATCT AGTGTGATCC ACCTGAAGGT TGCCACAACA
  CACTAAAAAA CCCAAACAAA CAAAAAACAA AAAAACAAAA CCACCCAAAT ATAAACAAAC
  R
  AAAATCGCAA ACTCCCATCG GAACGTTCAT TGGTGTCCAG ATCCCGGGAA GGGAAACGGT
  TGCAGGTCAT TTCTGGTGCT CAGGGATTGC CTTCCGGACG CCGCTGAGAC TTGGAAGAAT
  CTTAAAGGGA AGACGGGAGC TGACACCATT TGCACGGAAC TTTGGGGCGC GCTCGGAGGA
  GACAGGTGGG AGAGGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333514	CHEV_10_62845081	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239920562					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63218112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	478 bp distal
Cpgi1650	CpG island 1650	within coordinates
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	110 bp upstream
Gm66647	predicted gene, 66647	within coordinates
Rr215754	regulatory region 215754	489 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	within coordinates
Tssr97916	transcription start site region 97916	411 bp downstream