rs239920997 SNP Detail

Summary

• ID
  rs239920997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24605612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCCTGT CTCCTGTCTA
  AGAAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAATA GAAGGAAGGA
  AGGACAAACA AGCATTCTGT CATTGAGCTA CATCCCCAAG CCCTCCTTGG CTCCTTTGGG
  GTCTGTCAGG TGAGTATATT TCCTGCTAAC TGAGATGAGC ATGGGAGTTC CTGGTCTGTG
  R
  TCATGGCTTC TAACCTAGAA GGTCTGGCTG GCTGGAAAGG GTGGTTTTTG AAGGCATCTT
  GTTTCTCAGG GGATGAGTGC TTGTAGTTGG GGAGGTATTG CAGTTGATGG GACTAGACAG
  AGTGCTTCTC TCCAATAATA CTAGAACTCA AGAGACCAAG ACAGGGGGAT GCCCGCAAGC
  TTGAGGCCAG TCTACAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370795383	MGP_WTSI_7_25691206	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239920997					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370795383	MGP_WTSI_7_25691206	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24605612 () rs orientation: forward

Symbol	Name	Function Class
Arhgef1	Rho guanine nucleotide exchange factor 1	within coordinates
Cpgi18562	CpG island 18562	1471 bp distal
Rr370709	regulatory region 370709	814 bp upstream
Rr400160	regulatory region 400160	1798 bp downstream
Rr643583	regulatory region 643583	1770 bp distal
Rr643584	regulatory region 643584	1842 bp distal
Rr643585	regulatory region 643585	536 bp distal
Rr643586	regulatory region 643586	1034 bp distal
Rr643587	regulatory region 643587	497 bp proximal
Tssr65068	transcription start site region 65068	1935 bp downstream
Tssr65069	transcription start site region 65069	1836 bp downstream
Tssr65070	transcription start site region 65070	1810 bp downstream
Tssr65071	transcription start site region 65071	1776 bp downstream
Tssr65072	transcription start site region 65072	1728 bp downstream
Tssr65073	transcription start site region 65073	1119 bp upstream
Tssr65074	transcription start site region 65074	1146 bp upstream
Tssr65075	transcription start site region 65075	1431 bp upstream
Tssr65076	transcription start site region 65076	1482 bp upstream