rs239927154 SNP Detail

Summary

• ID
  rs239927154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103223643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGGTAC TCCTGTAATC
  CTAGCACTTG GGAGGCAGGA GAAGAGCAAG AGGTCAGAGC TAGCCTATGA AACTTTGTCC
  TTTTTCTTTT CTTTCTTTCT TTTTTTTAAA CTAATAATGG GTTGAAGAGG CCGCCCAGGG
  GTAAAGGCAC CTGCGCTGCT CTTCCAGAGA ACTCAGATTT AATTCCTATC ATCAACATCT
  R
  TAAATCTACT TCCAGAGGAT CCAACACCCT CTTCTGACTT CTGTAGGCCC TGCATGCAAG
  TGATACTTAG TATATGTAAA TATATGCAAA AAACCCACTG AGTTTTGTGT GTGTGTGTGT
  GTATAGATAG ATAGATGAAT GACAAGAAAT TACTTGACAC TAAACAATTA AATTCATGCA
  TTATCTCTGC ATTTTGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160931	CHEV_9_103248774	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239927154					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103223643 () rs orientation: forward

Symbol	Name	Function Class
Rr198506	regulatory region 198506	643 bp distal
Rr207098	regulatory region 207098	350 bp proximal
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	1276 bp downstream