rs239927547 SNP Detail

Summary

• ID
  rs239927547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40761407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTTCCG TTTTAATAAG
  AAAAGTTTTG TATTTGTAGA ATATTTGAAC ATCCGATTTA CTAATCATAT CTTTCATTTG
  AATGAGAGGG AGGATTTAAT ATGGGAGGAG AAAAACTCCC TAACTTGGAT TTTAATTTTC
  ACTTAGTTCT TTTTAAAGTA TATTTTATTG CCAGTTACAG TTTTTTTCTT TTAACTCTTA
  Y
  CGACATGGAT ATGAGTAGAT CCAGTTTTGA ATACCTTAAG GACAGAATAT ATCTCAAAAC
  CTTGGGAAAA AAACATAGCT ACTTACTACT TAAATGATAT CATTTAAGAA CAGCCTATGA
  GCCACTAGAA ACATCTTTTC CTTTTTATCG GCTTTCCCCT CTTTATGTGT TTAAGCTTGT
  TTTGTTAACC CTTTCGATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380132645	MGP_WTSI_10_40605217	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239927547					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380132645	MGP_WTSI_10_40605217	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40761407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1464	CpG island 1464	681 bp distal
Rr401845	regulatory region 401845	1872 bp downstream
Rr430264	regulatory region 430264	1574 bp distal
Rr430265	regulatory region 430265	1634 bp distal
Rr430266	regulatory region 430266	266 bp distal
Rr430267	regulatory region 430267	654 bp distal
Tssr93031	transcription start site region 93031	1928 bp downstream
Tssr93032	transcription start site region 93032	1903 bp downstream
Tssr93033	transcription start site region 93033	1813 bp downstream
Tssr93034	transcription start site region 93034	1777 bp downstream
Tssr93035	transcription start site region 93035	1549 bp downstream
Wasf1	WASP family, member 1	within coordinates