rs239932787 SNP Detail

Summary

• ID
  rs239932787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142946347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTCGG GCACAGCTAT
  CCAAGCTCCC GGGGCCACCG GGCCGCCCTC CGCCACCATG ACCGCCAACG GCACGGCAGA
  GGCTGTGCAG ATTCAGTTCG GGCTCATCAG CTGCGGCAAC AAGTACCTGA CAGCCGAGGC
  GTTCGGGTTC AAGGTGAACG CATCCGCTAG TAGCTTGAAA AAGAAGCAGA TCTGGACGCT
  R
  GAGCAACCTC CCGATGAGGC GGGCAGCGCG GCCGTGTGTC TGCGCAGCCA CCTGGGTCGC
  TACCTGGCCG CCGACAAGGA CGGCAACGTG ACCTGCGAGC GCGAGGTGCC CGACGGCGAC
  TGCCGCTTTC TCGTCGTGGC GCACGACGAC GGCCGCTGGT CGCTGCAGTC CGAGGCTCAC
  CGGCGCTACT TTGGCGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367003283	MGP_WTSI_5_143722271	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239932787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367003283	MGP_WTSI_5_143722271	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142946347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	within coordinates
Cpgi16968	CpG island 16968	1207 bp proximal
Fscn1	fascin actin-bundling protein 1	Coding-Synonymous
Rr378736	regulatory region 378736	within coordinates
Rr624074	regulatory region 624074	206 bp distal
Rr624075	regulatory region 624075	1232 bp proximal
Tssr49613	transcription start site region 49613	229 bp downstream
Tssr49614	transcription start site region 49614	99 bp downstream
Tssr49615	transcription start site region 49615	366 bp upstream
Tssr49616	transcription start site region 49616	408 bp upstream
Tssr49617	transcription start site region 49617	596 bp upstream