rs239932994 SNP Detail

Summary

• ID
  rs239932994
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98812292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAACCGG CACTTTCCGT
  GGACGCCACC TCCAGCCGCG ACGCTGGCGC GGGCGGGGGT TCACTCGCGG GGGTCCTGAG
  ACTGAGGAAA ACGCGCCAAG TTCCCCCTCG GCGGCCGTGC GGGGACCCTG CGGCTCGGGA
  GCGCCGCCAC CGCTGTGCGC CCGTAGCCTT CCCGGCCGGG CTGCGCCGGG GATGTAGTGG
  K
  GCCGCGGCGG GCAGGACCGA GCGGCGGCCC GGCTCCCGCT CCGCGGACGA ATGGTCACTC
  CCCCGCGGGA GGCGCCCACC AGCGATCCCT CTCCCGGGAC GGCGGCCGGG CTCACCTGTC
  GCGCCCGCAC TCTGCCCGGC TGGTCTCCCC GGCGGCGGCG CCGCGGACTC GCGAAGGGCC
  ATGACCGGGT AAGGAGCGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362556701	MGP_WTSI_4_98590746	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239932994					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362556701	MGP_WTSI_4_98590746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98812292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14474	CpG island 14474	within coordinates
Rr398351	regulatory region 398351	543 bp downstream
Rr595805	regulatory region 595805	1736 bp distal
Rr595806	regulatory region 595806	166 bp distal
Rr595807	regulatory region 595807	424 bp distal
Rr595808	regulatory region 595808	within coordinates
Rr595809	regulatory region 595809	1275 bp proximal
Tssr37901	transcription start site region 37901	1118 bp downstream
Tssr37902	transcription start site region 37902	379 bp downstream
Tssr37903	transcription start site region 37903	312 bp downstream
Tssr37904	transcription start site region 37904	278 bp downstream
Tssr37905	transcription start site region 37905	213 bp downstream
Tssr37906	transcription start site region 37906	162 bp downstream
Tssr37907	transcription start site region 37907	79 bp downstream
Usp1	ubiquitin specific peptidase 1	within coordinates