rs239944065 SNP Detail

Summary

• ID
  rs239944065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:14079193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGCAG GCGCCCTTGC
  TGTGTTTGTA CCTGAGGGGC CTCCTTTCTC CGTCACCCCT AGAGTGCCGC GGGGTCGAGG
  GGCAGTCCCC GGGGACACCT CGGCACGCAG CGGACATGCC TCTCTTTGCC ACCAACCCCT
  TCGACCAGGA TGTTGGTAAG TGTTTTCACC GCCCCCCGTG GGTGCCCCCC GAGACTGCGA
  R
  CCCGCGCCGA CTCCCGTCCC ACTGCGTTCG TTCATTCTGG ATTCCCGAGG CCGAGCCCAC
  GTTCTTCTCT CCCGGGGCCC CTTCGTTCAG AGTTGGGAGA GGGTTGAGCG CTTGGCGCAT
  CCTCTTTGGA AGAAATGGGA CTTAGAACCT CTCTAATGGG CCTTGGTAAG GGACTTGGGG
  AGGGGGAGCT TTGAAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353155409	MGP_WTSI_2_13996009	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs239944065					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353155409	MGP_WTSI_2_13996009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:14079193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11218	CpG island 11218	within coordinates
Gm57420	predicted gene, 57420	329 bp downstream
Rr55715	regulatory region 55715	within coordinates
Stam	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	within coordinates
Stamos	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	448 bp upstream
Tssr16223	transcription start site region 16223	757 bp downstream
Tssr16224	transcription start site region 16224	710 bp downstream
Tssr16225	transcription start site region 16225	236 bp downstream
Tssr16226	transcription start site region 16226	191 bp downstream
Tssr16227	transcription start site region 16227	147 bp downstream
Tssr22732	transcription start site region 22732	515 bp upstream