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rs239944065 SNP Detail
Summary
  • ID
    rs239944065
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:14079193 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGCAGGCAG GCGCCCTTGC
    TGTGTTTGTA CCTGAGGGGC CTCCTTTCTC CGTCACCCCT AGAGTGCCGC GGGGTCGAGG
    GGCAGTCCCC GGGGACACCT CGGCACGCAG CGGACATGCC TCTCTTTGCC ACCAACCCCT
    TCGACCAGGA TGTTGGTAAG TGTTTTCACC GCCCCCCGTG GGTGCCCCCC GAGACTGCGA
    R
    CCCGCGCCGA CTCCCGTCCC ACTGCGTTCG TTCATTCTGG ATTCCCGAGG CCGAGCCCAC
    GTTCTTCTCT CCCGGGGCCC CTTCGTTCAG AGTTGGGAGA GGGTTGAGCG CTTGGCGCAT
    CCTCTTTGGA AGAAATGGGA CTTAGAACCT CTCTAATGGG CCTTGGTAAG GGACTTGGGG
    AGGGGGAGCT TTGAAGGAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss353155409 MGP_WTSI_2_13996009 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs239944065 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353155409 MGP_WTSI_2_13996009 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:14079193 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11218 CpG island 11218 within coordinates
Gm57420 predicted gene, 57420 329 bp downstream
Rr55715 regulatory region 55715 within coordinates
Stam signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 within coordinates
Stamos signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand 448 bp upstream
Tssr16223 transcription start site region 16223 757 bp downstream
Tssr16224 transcription start site region 16224 710 bp downstream
Tssr16225 transcription start site region 16225 236 bp downstream
Tssr16226 transcription start site region 16226 191 bp downstream
Tssr16227 transcription start site region 16227 147 bp downstream
Tssr22732 transcription start site region 22732 515 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory