rs239956096 SNP Detail

Summary

• ID
  rs239956096
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37466409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGG TCCTTGCCTA AATGACAAAC
  W
  CATCTGTAGC CTCTGCCTGT GCCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322907355	CHEV_9_37362698	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239956096					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37466409 () rs orientation: forward

Symbol	Name	Function Class
Gm46107	predicted gene, 46107	331 bp upstream
Rr676717	regulatory region 676717	1764 bp distal
Rr676718	regulatory region 676718	331 bp distal
Rr676719	regulatory region 676719	44 bp proximal
Rr676720	regulatory region 676720	307 bp proximal
Tssr84410	transcription start site region 84410	501 bp upstream
Tssr84411	transcription start site region 84411	524 bp upstream
Tssr84412	transcription start site region 84412	532 bp upstream
Tssr84413	transcription start site region 84413	558 bp upstream
Tssr84414	transcription start site region 84414	580 bp upstream
Tssr88861	transcription start site region 88861	1716 bp upstream