rs239958054 SNP Detail

Summary

• ID
  rs239958054
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141389624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTACAC TGTAGCTGTC
  TTCAGAAGAG GGCGTCAGAT CTCATTACAG ATGGTTGGGA GCCACCACAT GGTTGCTGGG
  ATTTGAACTC AGGACCTTTG TCCTGAATAG TCAGTGCTCT TAACCCGTGA GCCATCTCTC
  CAGCCCTTGG TTTTATTTTT AGAGACAGGG TTTCTTCATT TAGCCTTCCC TGCCTGTGGT
  G
  GCACTCTCCT CTGTAGACCA GGCTGGCCTT GAACTTGCAG AGATCCACCT GCCTCTAGCA
  GCTGAGCGCT GGGATTAAAG GTGTGAGCCA GCACCCGGCT AGTTGTTCAG AGAGAGAATT
  AGAACTGCGC AGCTTCCTTC AAACTAAATG GCCACCACTA GCTTCCTCTC TTGGAGTAGG
  CCTTATTAGA AGCAGAAACC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388827	CHEV_4_141218228	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239958054					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141389624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	871 bp proximal
Gm54266	predicted gene, 54266	1782 bp upstream
Gm70264	predicted gene, 70264	1275 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	1292 bp proximal
Rr603851	regulatory region 603851	1795 bp proximal
Rr603852	regulatory region 603852	1895 bp proximal
Tssr40091	transcription start site region 40091	1874 bp upstream
Tssr40092	transcription start site region 40092	1928 bp upstream
Tssr44355	transcription start site region 44355	1686 bp downstream
Tssr44356	transcription start site region 44356	1750 bp downstream