rs239959523 SNP Detail

Summary

• ID
  rs239959523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46386723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGCGCA TTCTGTCTTG
  TCTTCGTGAT TTCAGCCGAA GTTTAAAGAT GCCCTGTAAA AGATCAGTTT CCAAATGGGC
  TGGCTGTCTT TGGGGGTAGA AATGGCACTT TCTCGTCTCC TATTCTTTTT TGCATCCTGT
  TTCTTCAGTC AGCCTTCAGA CAAAACAGGT GTTATGAGAC AAGTCCTTGT GGTCTTTCTG
  R
  ACCAAAAATA GATTCAGAGG TGGCCACATT CAGGCAGGCA GTCGTTGTAT TGTATGATCC
  TGAAAAGTTC CTTGCCTTGG GGTATTGGCA AATGGTGGTC CTGAAGTGAG GGATGCCTTT
  GCAGGTTACA CACCCTTTAA AGCTGAATCT TTTTCCTATG TGGCATCCTC TTATTGCCTC
  TGGAGATGGG AGATGGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595888	MGP_WTSI_19_46472774	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239959523					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595888	MGP_WTSI_19_46472774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46386723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	859 bp distal
Rr406001	regulatory region 406001	1357 bp downstream
Rr548730	regulatory region 548730	1248 bp distal
Rr548731	regulatory region 548731	1522 bp distal
Rr548732	regulatory region 548732	1414 bp distal
Rr548733	regulatory region 548733	702 bp distal
Rr548734	regulatory region 548734	660 bp distal
Rr548735	regulatory region 548735	1713 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1285 bp downstream
Tssr156754	transcription start site region 156754	1251 bp downstream