rs239961220 SNP Detail

Summary

• ID
  rs239961220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151922832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCAGCAG GAGCCCCGCT CCCCCTCCCT
  TCCCCCTTCT CCCTTAGCAG TCCACGTGTC TCTATTGTCT GCTCCCCCGC TTCAGGGAAA
  GACACAGCCT CGGATGTGTC AAAACCACCA CCCCCCGGCA GCAGGGAAAT TAATTACTGG
  R
  CGATTTTCAC TTCCTCTCGC AGCGCTCGCC TGAGCTAGGC ACCGGAACAG GACCGGCTGA
  GCGAGGCCGT CATCGGCATG GGTGACCCGC TCCTTCCACC AGTTCTGAAG AAGAAAGTTG
  AATCCCAAAC CCAACAGGGG GCTCTAGTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562096	CHEV_2_151906648	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239961220					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151922832 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	within coordinates
Cpgi12435	CpG island 12435	593 bp proximal
Gm75114	predicted gene, 75114	within coordinates
Rr567274	regulatory region 567274	548 bp distal
Rr567275	regulatory region 567275	within coordinates
Rr567276	regulatory region 567276	536 bp proximal
Rr567277	regulatory region 567277	628 bp proximal
Scrt2	scratch family zinc finger 2	905 bp upstream
Tssr20749	transcription start site region 20749	82 bp downstream
Tssr20750	transcription start site region 20750	38 bp downstream
Tssr20751	transcription start site region 20751	6 bp downstream
Tssr20752	transcription start site region 20752	2 bp upstream
Tssr20753	transcription start site region 20753	31 bp upstream
Tssr20754	transcription start site region 20754	53 bp upstream
Tssr20755	transcription start site region 20755	196 bp upstream
Tssr20756	transcription start site region 20756	320 bp upstream
Tssr20757	transcription start site region 20757	462 bp upstream
Tssr20758	transcription start site region 20758	690 bp upstream
Tssr20759	transcription start site region 20759	720 bp upstream
Tssr20760	transcription start site region 20760	898 bp upstream
Tssr20761	transcription start site region 20761	956 bp upstream