rs239962208 SNP Detail

Summary

• ID
  rs239962208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75466386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGAGACA CTAGAAAACT
  AAATGTGGGA TGGAAAAGAG CCAACGGTAC TGGAAGATGA GAGACGTCCA CTGGTAGCAG
  AGAACAGGTG TGGCAAGCCA GATGAGCTCT CCCTAATCAA GGGCCATCCT GCGCTGACTT
  GGCAGACATG TCAGTGTCTT TGAATCACGG TGACAGCCTA GAGTGGTATA GATGCTTGGA
  R
  AAGCAACCCC AGAGGACTCT CCTGTGGGTC TCAAGTCACT AACACAGCCG AGGCTGTCTC
  AGCTAGAACC CCCCCCCCCC CCATTGGAAG CAAAGAGCCC AAAGGGTGCA AGCTCAGAAT
  GGTTTCCATA TCTTGGAGCC AATGCTTTCT CAGGTTTGAG GCAAGCTATT TGCACAAGAG
  TCACGTGAGC TCTGGAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383901633	MGP_WTSI_11_75389062	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239962208					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383901633	MGP_WTSI_11_75389062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75466386 () rs orientation: forward

Symbol	Name	Function Class
Rr402730	regulatory region 402730	1851 bp downstream
Rr402731	regulatory region 402731	267 bp upstream
Rr451211	regulatory region 451211	1736 bp distal
Rr451212	regulatory region 451212	1990 bp distal
Rr451213	regulatory region 451213	233 bp proximal
Slc43a2	solute carrier family 43, member 2	within coordinates
Tssr102985	transcription start site region 102985	1212 bp upstream
Tssr102986	transcription start site region 102986	1330 bp upstream
Tssr102987	transcription start site region 102987	1377 bp upstream
Tssr102988	transcription start site region 102988	1456 bp upstream
Tssr102989	transcription start site region 102989	1530 bp upstream
Tssr102990	transcription start site region 102990	1567 bp upstream