rs239971708 SNP Detail

Summary

• ID
  rs239971708
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CATGATAACA ATCTCCATTC CTCACATGGG ACTTTATTAC ATATACTACT
  M
  CCTTAAACTC CCTGAGTGCA GAAAGAGACA GGTCTTGGAG TCTTCCGTTT           
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697914	CHEV_3_32265973	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239971708					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421200 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	692 bp distal
Rr77496	regulatory region 77496	199 bp distal
Rr374783	regulatory region 374783	1115 bp downstream
Tssr28744	transcription start site region 28744	1725 bp downstream
Tssr28745	transcription start site region 28745	1698 bp downstream
Tssr32923	transcription start site region 32923	1896 bp upstream
Tssr32924	transcription start site region 32924	1833 bp upstream
Tssr32925	transcription start site region 32925	1625 bp upstream
Tssr32926	transcription start site region 32926	1429 bp upstream
Tssr32927	transcription start site region 32927	1360 bp upstream
Tssr32928	transcription start site region 32928	1138 bp upstream
Zmat3	zinc finger matrin type 3	1386 bp upstream