rs239974322 SNP Detail

Summary

• ID
  rs239974322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAGGCC AAAAAGCAAA
  ACCTGAGAAA ACAAAAGGTT GTTTTCTCAG GAAAAGAAAA ACCTTTACAA CCCTACTGAC
  GAATCTGCTT CCACTAAGAT GCTAGCTTGG CCAAGTCTGT TATGTCCACC TGAAAAAGTC
  TTAGCAGAGA ATTTTTGCAA TCCCACCCCA ACAACTTCCT ACAAAGGCTT GCTTTTCATC
  Y
  GACTTCCTAC ATTCCCACCC AGCACTGGTA TCAAACATAC TATACCCATA CTGGTTTGTT
  TACTCTGCAT AGGTGCTATG TATAAAACAT CTTAGCTATG GTTTTAATGT TAAATTACAG
  GCAAGGGGAA AATTGATGGC CTTTTCTGGT GCAACCCACA GGACCTTGGC ACCATGGTTA
  CCTTGAAACC GATATGCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662557	MGP_WTSI_19_5796207	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239974322					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662557	MGP_WTSI_19_5796207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846235 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	226 bp upstream
Rr543160	regulatory region 543160	1789 bp distal
Rr543161	regulatory region 543161	1247 bp proximal
Tssr5415	transcription start site region 5415	627 bp downstream
Tssr5416	transcription start site region 5416	1103 bp downstream
Tssr157645	transcription start site region 157645	146 bp downstream
Tssr157646	transcription start site region 157646	176 bp downstream
Tssr157647	transcription start site region 157647	338 bp downstream
Tssr157648	transcription start site region 157648	504 bp downstream
Tssr157649	transcription start site region 157649	604 bp downstream
Tssr157650	transcription start site region 157650	663 bp downstream
Tssr157651	transcription start site region 157651	717 bp downstream
Tssr157652	transcription start site region 157652	854 bp downstream
Tssr157653	transcription start site region 157653	971 bp downstream
Tssr157654	transcription start site region 157654	1014 bp downstream
Tssr157655	transcription start site region 157655	1051 bp downstream
Tssr157656	transcription start site region 157656	1081 bp downstream
Tssr157657	transcription start site region 157657	1203 bp downstream
Tssr157658	transcription start site region 157658	1255 bp downstream
Tssr157659	transcription start site region 157659	1358 bp downstream
Tssr157660	transcription start site region 157660	1511 bp downstream
Tssr157661	transcription start site region 157661	1532 bp downstream
Tssr157662	transcription start site region 157662	1637 bp downstream
Tssr157663	transcription start site region 157663	1696 bp downstream
Tssr157664	transcription start site region 157664	1818 bp downstream
Tssr157665	transcription start site region 157665	1825 bp downstream
Tssr157666	transcription start site region 157666	1850 bp downstream