rs239974499 SNP Detail

Summary

• ID
  rs239974499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12305529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTGAGG ACCAACCCGA
  TTCTCTATAG TGTAGGTTAT TTTGTAACTC TGGCCGGCCT CGAACTCACA GACACCAGCC
  TGCCTCTGCC AACCAAGTAT TAAGCCTGTG CTCCCCTCCC CTCACAGCTG TGGGTTTCTA
  CTGGTCCCAA GCACCTCCTC CCCTAGTGTT CACCTCTGAA CAGTAGGGAA ACGGATGTTA
  Y
  CAGATGCATC CAAACACTCA GATTTACATT AGGAGGGGGG GAAAGAACAC TAAATTGCCG
  CGAGGAATGG CTCTGGTTCT TTTCAACCAG GGGCCACACT ACAGGTTAGC ATCACTTACT
  GGTGGTGTCA AACGGTATCT GCTTGCACTG TGCAGACCTC TCTGAGGGCC AGGGACAGTA
  GTAGACAGCT CCCCCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353116099	MGP_WTSI_2_12222345	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239974499					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353116099	MGP_WTSI_2_12222345	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12305529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11209	CpG island 11209	711 bp proximal
E030013I19Rik	RIKEN cDNA E030013I19 gene	528 bp upstream
Itga8	integrin alpha 8	within coordinates
Tssr16173	transcription start site region 16173	31 bp downstream
Tssr16174	transcription start site region 16174	76 bp upstream
Tssr16175	transcription start site region 16175	301 bp upstream
Tssr16176	transcription start site region 16176	490 bp upstream
Tssr16177	transcription start site region 16177	511 bp upstream
Tssr16178	transcription start site region 16178	537 bp upstream
Tssr16179	transcription start site region 16179	585 bp upstream
Tssr22663	transcription start site region 22663	332 bp downstream
Tssr22664	transcription start site region 22664	1176 bp downstream
Tssr22665	transcription start site region 22665	1196 bp downstream
Tssr22666	transcription start site region 22666	1216 bp downstream
Tssr22667	transcription start site region 22667	1270 bp downstream
Tssr22668	transcription start site region 22668	1278 bp downstream